What is SpatialLeiden?
SpatialLeiden is an implementation of Multiplex Leiden clustering that can be used to cluster spatially resolved omics data.
SpatialLeiden integrates with the scverse by leveraging anndata but can also be used independently.
Citations
If you are using spatialleiden for your research please cite
Müller-Bötticher, N., Sahay, S., Eils, R., & Ishaque, N. (2025). SpatialLeiden: spatially aware Leiden clustering. Genome Biology, 26(1), 24. https://doi.org/10.1186/s13059-025-03489-7
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