spatialleiden.search_resolution
- spatialleiden.search_resolution(adata, n_clusters, *, start=(1.0, 0.4), step=0.1, n_iter=15, latent_kwargs=None, spatial_kwargs=None)
Search the resolutions of the spatial and latent space layer to obtain n clusters using SpatialLeiden clustering.
- Parameters:
adata (AnnData)
n_clusters (int) – Number of clusters.
start (tuple[float, float], optional) – Starting points for resolution, latent and spatial layer, respectively.
step (float, optional) – Increment if cluster number is incorrect.
n_iter (int, optional) – Maximum number of iterations before stopping. If correct number of clusters is obtained it will stop early.
latent_kwargs (dict | None, optional) – Keyword arguments passed to
spatialleiden.leiden().spatial_kwargs (dict | None, optional) – Keyword arguments passed to
spatialleiden.spatialleiden().
- Returns:
Target resolution for the latent space and spatial layer.
- Return type: