Installation

PyPi and pip

To install spatialleiden from PyPI using pip just run

pip install spatialleiden

bioconda and conda

spatialleiden is available for Miniconda installations from the bioconda channel.

conda install bioconda::spatialleiden

Note

Of course, it is also possible to use mamba instead of conda to speed up the installation.

From GitHub

You can install the latest versions directly from GitHub. To do so clone the repository using the git clone command. Navigate into the downloaded directory and install using

pip install -e .

If you want to install the development version you can install the additional optional dependencies with

pip install -e '.[dev]'