Installation

PyPi and pip

To install spatialleiden from PyPI using pip just run

pip install spatialleiden

bioconda and conda

spatialleiden is not yet available for Miniconda installations. But we are planning to add it to bioconda soon.

From GitHub

You can install the latest versions directly from GitHub. To do so clone the repository using the git clone command. Navigate into the downloaded directory and install using

pip install -e .

If you want to install the development version you can install the additional optional dependencies with

pip install -e '.[dev]'