spatialleiden.search_resolution_latent
- spatialleiden.search_resolution_latent(adata, ncluster, *, start=1, step=0.1, n_iterations=15, **kwargs)
Search the resolution to obtain n clusters using Leiden clustering.
- Parameters:
adata (AnnData)
ncluster (int) – Number of clusters.
start (float, optional) – Starting point for resolution.
step (float, optional) – Increment if cluster number is incorrect.
n_iterations (int, optional) – Maximum number of iterations before stopping. If correct number of clusters is obtained it will stop early.
kwargs – Other keyword arguments are passed to
scanpy.tl.leiden().
- Returns:
Target resolution.
- Return type: